Source: samtools
# tabix is needed for the regression tests.
Standards-Version: 4.7.4
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:
 Charles Plessy <plessy@debian.org>,
 Andreas Tille <tille@debian.org>,
 Étienne Mollier <emollier@debian.org>,
Section: science
Build-Depends:
 debhelper-compat (= 14),
 bash-completion,
 libio-pty-perl <!nocheck>,
 libncurses-dev,
 libhts-dev (>= 1.24~),
 zlib1g-dev,
 autoconf-archive,
 pkgconf,
 tabix,
 liblzma-dev,
 libbz2-dev,
Vcs-Browser: https://salsa.debian.org/med-team/samtools
Vcs-Git: https://salsa.debian.org/med-team/samtools.git
Homepage: https://www.htslib.org/
Rules-Requires-Root: no

Package: samtools
Architecture: any
# older iva & bio-tradis have bad samtools version parsing code
Depends:
 python3,
 ${shlibs:Depends},
 ${misc:Depends},
Suggests:
 cwltool,
Description: processing sequence alignments in SAM, BAM and CRAM formats
 Samtools is a set of utilities that manipulate nucleotide sequence alignments
 in the binary BAM format. It imports from and exports to the ascii SAM
 (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing,
 and allows one to retrieve reads in any regions swiftly. It is designed to work
 on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP
 or HTTP server.

Package: samtools-test
Architecture: all
Multi-Arch: foreign
Depends:
 ${misc:Depends},
Recommends:
 libio-pty-perl,
Description: test files for the samtools package
 Samtools is a set of utilities that manipulate nucleotide sequence alignments
 in the binary BAM format.
 .
 This package contains test files for the samtools package.
